Data Integration in Poplar: 'Omics Layers and Integration Strategies.
Identifieur interne : 000A46 ( Main/Exploration ); précédent : 000A45; suivant : 000A47Data Integration in Poplar: 'Omics Layers and Integration Strategies.
Auteurs : Deborah Weighill [États-Unis] ; Timothy J. Tschaplinski [États-Unis] ; Gerald A. Tuskan [États-Unis] ; Daniel Jacobson [États-Unis]Source :
- Frontiers in genetics [ 1664-8021 ] ; 2019.
Abstract
Populus trichocarpa is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large 'omics datasets. However, only few studies in Populus have attempted to integrate various data types. This review will summarize various 'omics data layers, focusing on their application in Populus species. Subsequently, network and signal processing techniques for the integration and analysis of these data types will be discussed, with particular reference to examples in Populus.
DOI: 10.3389/fgene.2019.00874
PubMed: 31608114
PubMed Central: PMC6773870
Affiliations:
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This research has generated several large 'omics datasets. However, only few studies in <i>Populus</i> have attempted to integrate various data types. This review will summarize various 'omics data layers, focusing on their application in <i>Populus</i> species. Subsequently, network and signal processing techniques for the integration and analysis of these data types will be discussed, with particular reference to examples in <i>Populus</i>.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31608114</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-8021</ISSN><JournalIssue CitedMedium="Print"><Volume>10</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>Frontiers in genetics</Title><ISOAbbreviation>Front Genet</ISOAbbreviation></Journal><ArticleTitle>Data Integration in Poplar: 'Omics Layers and Integration Strategies.</ArticleTitle><Pagination><MedlinePgn>874</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fgene.2019.00874</ELocationID><Abstract><AbstractText><i>Populus trichocarpa</i> is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large 'omics datasets. However, only few studies in <i>Populus</i> have attempted to integrate various data types. This review will summarize various 'omics data layers, focusing on their application in <i>Populus</i> species. Subsequently, network and signal processing techniques for the integration and analysis of these data types will be discussed, with particular reference to examples in <i>Populus</i>.</AbstractText><CopyrightInformation>Copyright © 2019 Weighill, Tschaplinski, Tuskan and Jacobson.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Weighill</LastName><ForeName>Deborah</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tschaplinski</LastName><ForeName>Timothy J</ForeName><Initials>TJ</Initials><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald A</ForeName><Initials>GA</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jacobson</LastName><ForeName>Daniel</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United 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Tschaplinski</name><name sortKey="Tschaplinski, Timothy J" sort="Tschaplinski, Timothy J" uniqKey="Tschaplinski T" first="Timothy J" last="Tschaplinski">Timothy J. Tschaplinski</name><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name><name sortKey="Weighill, Deborah" sort="Weighill, Deborah" uniqKey="Weighill D" first="Deborah" last="Weighill">Deborah Weighill</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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